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Source database (GenBank or RefSeq) File type

ASM52571v1

Organism name:: Lactobacillus helveticus H9 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: H9
BioSample:: SAMN02641509
BioProject:: PRJNA49151
Submitter:: The Key Laboratory of Dairy Biotechnology and Bioengineering, Education Ministry of P. R. China, Department of Food Science and Engineering, Inner Mongolia Agricultural University, China
Date:: 2014/02/03
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000525715.1 (latest)
RefSeq assembly accession:: GCF_000525715.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 95671 [UID] 899408 [GenBank] 1497578 [RefSeq]

See Genome Information for Lactobacillus helveticus

Pathogen Detection Resources

There are 203 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000525715.1	=	GCF_000525715.1	ASM52571v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA available from Dr. Heping Zhang(hepingdd@vip.sina.com) and Dr. Zhihong Sun (sunzhihong78@163.com) at Inner Mongolia Agricultural University, China.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/01/2024 00:49:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,961
CDSs (total)::1,885
Genes (coding)::1,611
CDSs (with protein)::1,611
Genes (RNA)::76
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::61
ncRNAs::3
Pseudo Genes (total)::274
CDSs (without protein)::274
Pseudo Genes (ambiguous residues)::0 of 274
Pseudo Genes (frameshifted)::194 of 274
Pseudo Genes (incomplete)::86 of 274
Pseudo Genes (internal stop)::81 of 274
Pseudo Genes (multiple problems)::81 of 274
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,871,119
Total ungapped length	1,871,119
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.15	88.37	78.09
Best-match type	99.15	88.37	78.09

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ASM52571v1

See Genome Information for Lactobacillus helveticus

Pathogen Detection Resources

There are 203 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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