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ASM14551v1

Organism name:
Cutibacterium acnes HL030PA2 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HL030PA2
BioSample:
SAMN00189207
BioProject:
PRJNA49243
Submitter:
Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine
Date:
2010/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000145515.1 (latest)
RefSeq assembly accession:
GCF_000145515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADXZ01
Assembly method:
Velvet v. 0.7.57
Genome coverage:
67.4x
Sequencing technology:
Illumina

IDs: 460388 [UID] 168128 [GenBank] 460388 [RefSeq]

See Genome Information for Cutibacterium acnes

There are 504 assemblies for this organism

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History (Show revision history)

Comment

Propionibacterium acnes HL030PA2 (No 16S rRNA gene available) is a member of the Actinobacteria division of the domain bacteria and has been isolated from the skin.

This is a reference genome for the Human Microbiome Project. This project is co-owned ... with the Human Microbiome Project DACC.

The bacterial isolate and source DNA was provided by Huiying Li, Ph.D. Department of Molecular and Medical Pharmacology, University of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building 114, Los Angeles, CA 90095, USA. This project is funded by the following grant support: "Metagenomic study of the human skin microbiome associated with acne" (1UH2AR057503).

Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. 

The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) Acne Demonstration Project is funding the sequence characterization of the Propionibacterium acnes HL030PA2 genome.

Annotation was added to the contigs in December 2010.
Product names were updated in June 2013  more

Global statistics

Total sequence length2,505,472
Total ungapped length2,503,604
Gaps between scaffolds0
Number of scaffolds22
Scaffold N50715,432
Scaffold L502
Number of contigs68
Contig N5091,692
Contig L5010
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)68

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000145525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome n/an/an/a22

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome AllAssembled moleculeUnlocalized scaffolds2,505,47202,505,472220222,503,60402,503,604715,4320715,43246046000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cutibacterium acnes HL030PA2Cutibacterium acnes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000472405.1Cutibacterium acnes DSM 1897type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000472405.1Cutibacterium acnestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5198.4499.42
Best-match type99.5198.4499.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna