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IDs: 460388 [UID] 168128 [GenBank] 460388 [RefSeq]
Propionibacterium acnes HL030PA2 (No 16S rRNA gene available) is a member of the Actinobacteria division of the domain bacteria and has been isolated from the skin. This is a reference genome for the Human Microbiome Project. This project is co-owned ... with the Human Microbiome Project DACC. The bacterial isolate and source DNA was provided by Huiying Li, Ph.D. Department of Molecular and Medical Pharmacology, University of California, Los Angeles, 4339 CNSI, 570 Westwood Plaza, Building 114, Los Angeles, CA 90095, USA. This project is funded by the following grant support: "Metagenomic study of the human skin microbiome associated with acne" (1UH2AR057503). Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) Acne Demonstration Project is funding the sequence characterization of the Propionibacterium acnes HL030PA2 genome. Annotation was added to the contigs in December 2010. Product names were updated in June 2013 more
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