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IDs: 301968 [UID] 301528 [GenBank] 301968 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4091627 Source DNA and organism available from John Gladden (JMGladden@lbl.gov) Contacts: John Gladden (JMGladden@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::04/16/2023 14:33:43Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,997CDSs (total)::2,945Genes (coding)::2,920CDSs (with protein)::2,920Genes (RNA)::52rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::46ncRNAs::3Pseudo Genes (total)::25CDSs (without protein)::25Pseudo Genes (ambiguous residues)::0 of 25Pseudo Genes (frameshifted)::8 of 25Pseudo Genes (incomplete)::17 of 25Pseudo Genes (internal stop)::3 of 25Pseudo Genes (multiple problems)::3 of 25CRISPR Arrays::9##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Rhodothermus marinus SG0.5JP17-172collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Missingenvironment::Hot spring, Marinenum_replicons::3ref_biomaterial::Missingbiotic_relationship::Free livingtrophic_level::Heterotrophrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi08211Gene Calling Method::Prodigal 1.4, GenePRIMPCell Shape::Rod-shapedMotility::NonmotileSporulation::NonsporulatingTemperature Range::ThermophileSalinity::HalophileGram Staining::Gram-Diseases::None##MIGS-Data-END##
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