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ASM26096v1

Organism name:
Methylophaga frappieri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JAM7
BioSample:
SAMN02603343
BioProject:
PRJNA84459
Submitter:
INRS-Institut Armand-Frappier
Date:
2012/05/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000260965.1 (latest)
RefSeq assembly accession:
GCF_000260965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler gsAssembler v. v2.5.3; CONSED v. 20.0
Sequencing technology:
454

IDs: 379218 [UID] 376428 [GenBank] 379218 [RefSeq]

See Genome Information for Methylophaga frappieri

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Strain available from the Richard Villemur laboratory at INRS-Institut Armand-Frappier.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000260965.1-RS_2024_03_27
Annotation Date::03/27/2024 01:05:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,661
CDSs (total)::2,607
Genes (coding)::2,591
CDSs (with protein)::2,591
Genes (RNA)::54
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::16
CDSs (without protein)::16
Pseudo Genes (ambiguous residues)::0 of 16
Pseudo Genes (frameshifted)::7 of 16
Pseudo Genes (incomplete)::8 of 16
Pseudo Genes (internal stop)::2 of 16
Pseudo Genes (multiple problems)::1 of 16
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,745,290
Total ungapped length2,745,290
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000260975.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003380.1=NC_017856.1
Plasmid unnamedCP003381.1=NC_017858.1

Assembly statistics

MoleculeTotal
Length
All2,745,290
Chromosome 2,697,465
Plasmid unnamed47,825

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylophaga frappieriMethylophaga frappieri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000300995.1Alcanivorax hongdengensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.561.601.20

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected