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ASM9238v1

Organism name:
Streptomyces bingchenggensis BCW-1 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BCW-1
BioSample:
SAMN02603683
BioProject:
PRJNA46847
Submitter:
Northeast Agricultural University
Date:
2010/05/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000092385.1 (latest)
RefSeq assembly accession:
GCF_000092385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 354548 [UID] 113018 [GenBank] 354548 [RefSeq]

History (Show revision history)

Comment

Source DNA is available from Yijun Yan, quasar110@126.com. 
Bacteria available from China General Microbiology Culture Collection Center (Accession No:CGMCC1734), Institute of Microbiology, Chinese Academy of Sciences.
Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic ... Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000092385.1-RS_2024_03_27
Annotation Date::03/27/2024 06:55:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::10,158
CDSs (total)::10,069
Genes (coding)::9,677
CDSs (with protein)::9,677
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::392
CDSs (without protein)::392
Pseudo Genes (ambiguous residues)::0 of 392
Pseudo Genes (frameshifted)::143 of 392
Pseudo Genes (incomplete)::312 of 392
Pseudo Genes (internal stop)::34 of 392
Pseudo Genes (multiple problems)::86 of 392
##Genome-Annotation-Data-END##

Global statistics

Total sequence length11,936,683
Total ungapped length11,936,683
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000092395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002047.1=NC_016582.1

Assembly statistics

MoleculeTotal
Length
Chromosome 11,936,683

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces bingchenggensis BCW-1Streptomyces bingchenggensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154605.1Streptomyces milbemycinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9195.2997.96

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly