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IDs: 284708 [UID] 284138 [GenBank] 284708 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4086526 Source DNA and organism available from William Hickey (wjhickey@wisc.edu) Contacts: William Hickey (wjhickey@wisc.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::03/12/2023 12:29:30Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.4Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::6,059CDSs (total)::5,960Genes (coding)::5,927CDSs (with protein)::5,927Genes (RNA)::99rRNAs::5, 5, 5 (5S, 16S, 23S)complete rRNAs::5, 5, 5 (5S, 16S, 23S)tRNAs::81ncRNAs::3Pseudo Genes (total)::33CDSs (without protein)::33Pseudo Genes (ambiguous residues)::0 of 33Pseudo Genes (frameshifted)::11 of 33Pseudo Genes (incomplete)::28 of 33Pseudo Genes (internal stop)::2 of 33Pseudo Genes (multiple problems)::8 of 33CRISPR Arrays::3##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Delftia sp. Cs1-4collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::USAenvironment::Fresh water, Oil fields, Sludge, Soilnum_replicons::1ref_biomaterial::Missingbiotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi04039Funding Program::DOE-CSP 2009Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::PAH contaminated soils in WisconsinTemperature Range::MesophileTemperature Optimum::30CGram Staining::Gram-Diseases::None##MIGS-Data-END##
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