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IDs: 446498 [UID] 385588 [GenBank] 446498 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4086745 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000266945.1-RS_2024_03_22Annotation Date::03/22/2024 16:46:59Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::5,370CDSs (total)::5,316Genes (coding)::5,303CDSs (with protein)::5,303Genes (RNA)::54rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::47ncRNAs::4Pseudo Genes (total)::13CDSs (without protein)::13Pseudo Genes (ambiguous residues)::0 of 13Pseudo Genes (frameshifted)::4 of 13Pseudo Genes (incomplete)::9 of 13Pseudo Genes (internal stop)::1 of 13Pseudo Genes (multiple problems)::1 of 13CRISPR Arrays::2##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Desulfomonile tiedjei DSM 6799collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::USAenvironment::Sludgenum_replicons::2ref_biomaterial::DSM 06799, ATCC 49306biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi03016Type Strain::YesGreengenes ID::140135Funding Program::DOE-GEBA 2007Gene Calling Method::Prodigal, GenePRIMPIsolation Site::Sewage sludge; USATemperature Range::MesophileTemperature Optimum::37CGram Staining::Gram-Diseases::None##MIGS-Data-END##
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