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IDs: 275888 [UID] 240468 [GenBank] 275888 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087334 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::05/02/2023 01:42:57Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::3,349CDSs (total)::3,264Genes (coding)::3,214CDSs (with protein)::3,214Genes (RNA)::85rRNAs::5, 5, 5 (5S, 16S, 23S)complete rRNAs::5, 5, 5 (5S, 16S, 23S)tRNAs::68ncRNAs::2Pseudo Genes (total)::50CDSs (without protein)::50Pseudo Genes (ambiguous residues)::0 of 50Pseudo Genes (frameshifted)::22 of 50Pseudo Genes (incomplete)::31 of 50Pseudo Genes (internal stop)::9 of 50Pseudo Genes (multiple problems)::9 of 50CRISPR Arrays::1##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Bacteroides helcogenes P 36-108, DSM 20613collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Missingenvironment::Hostnum_replicons::1ref_biomaterial::DSM 20613, ATCC 35417biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi04002Type Strain::YesFunding Program::DOE-GEBA 2009Isolation Site::Pig faecesHost Name::Sus scrofaBody Sample Site::Gastrointestinal tractCell Shape::Rod-shapedSporulation::NonsporulatingTemperature Range::MesophileGram Staining::Gram-Diseases::None##MIGS-Data-END##
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