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Galma1

Organism name:
Galerina marginata CBS 339.88 (basidiomycete fungi)
Infraspecific name:
Strain: CBS 339.88
BioSample:
SAMN02746050
BioProject:
PRJNA207683
Submitter:
DOE Joint Genome Institute
Date:
2014/06/06
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000697645.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AYUM01
Assembly method:
Newbler v. 2.5
Genome coverage:
34x
Sequencing technology:
454; Illumina

IDs: 182671 [UID] 1104188 [GenBank]

See Genome Information for Galerina marginata

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Galma1
JGI Project ID: 400997
The DNA was provided by Jonathan Walton(walton@msu.edu)
The strain is available from Centraalbureau voor Schimmelcultures (CBS), Utrecht, Netherlands
Contacts: Jonathan Walton (walton@msu.edu)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution ... and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length59,418,196
Total ungapped length57,882,909
Gaps between scaffolds0
Number of scaffolds414
Scaffold N501,219,514
Scaffold L5015
Number of contigs1,431
Contig N50154,431
Contig L5098
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,421

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced59,418,19641457,882,9091,219,5141,0170