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ASM1102v1

Organism name:
Rothia mucilaginosa DY-18 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DY-18
BioSample:
SAMD00060968
BioProject:
PRJDA38547
Submitter:
Department of Bacteriology, Osaka Dental University
Date:
2010/01/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000011025.1 (latest)
RefSeq assembly accession:
GCF_000011025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 107428 [UID] 11828 [GenBank] 107428 [RefSeq]

See Genome Information for Rothia mucilaginosa

There are 139 assemblies for this organism

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History (Show revision history)

Comment

Genome Coverage: 20.89x
Sequencing Technology: 454 GS FLX
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 00:47:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,770
CDSs (total)::1,709
Genes (coding)::1,701
CDSs (with protein)::1,701
Genes (RNA)::61
rRNAs::4, 3, 2 (5S, 16S, 23S)
complete rRNAs::4, 3, 2 (5S, 16S, 23S)
tRNAs::49
ncRNAs::3
Pseudo Genes (total)::8
CDSs (without protein)::8
Pseudo Genes (ambiguous residues)::0 of 8
Pseudo Genes (frameshifted)::2 of 8
Pseudo Genes (incomplete)::7 of 8
Pseudo Genes (internal stop)::1 of 8
Pseudo Genes (multiple problems)::1 of 8
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,264,603
Total ungapped length2,264,603
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000011035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP011540.1=NC_013715.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,264,603

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rothia mucilaginosa DY-18Rothia mucilaginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000175615.1Rothia mucilaginosa ATCC 25296type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000175615.1Rothia mucilaginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.0990.6891.06
Best-match type94.0990.6891.06

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna