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Source database (GenBank or RefSeq) File type

Segn_rugo_CDC_945_V2

Organism name:: Segniliparus rugosus ATCC BAA-974 (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC BAA-974
BioSample:: SAMN02463810
BioProject:: PRJNA40685
Submitter:: Broad Institute
Date:: 2013/09/30
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000185725.2 (latest)
RefSeq assembly accession:: GCF_000185725.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: ACZI02
Assembly method:: Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:: 13.0x
Sequencing technology:: 454

IDs: 66741 [UID] 792248 [GenBank] 823208 [RefSeq]

See Genome Information for Segniliparus rugosus

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000185725.2	=	GCF_000185725.2	Segn_rugo_CDC_945_V2	Scaffold	Latest GenBank, Latest RefSeq
GCA_000185725.1	=	GCF_000185725.1	ASM18572v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Butler, R. (Centers for Disease Control and Prevention, USA).
Bacteria provided by Butler, R. (Centers for Disease ... Control and Prevention, USA). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length	3,587,629
Total ungapped length	3,587,529
Gaps between scaffolds	0
Number of scaffolds	2
Scaffold N50	2,019,037
Scaffold L50	1
Number of contigs	3
Contig N50	1,158,288
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	3

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.38	29.31	33.29

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Segn_rugo_CDC_945_V2

See Genome Information for Segniliparus rugosus

Pathogen Detection Resources

History (Show revision history)

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Average Nucleotide Identity (ANI) data

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