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ASM17645v1

Organism name:
Vibrio cholerae CT 5369-93 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CT 5369-93
BioSample:
SAMN02393824
BioProject:
PRJNA40501
Submitter:
Los Alamos National Laboratory (LANL), National Microbial Pathogen Data Resource (NMPDR)
Date:
2009/10/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_000176455.1 (latest)
RefSeq assembly accession:
GCF_000176455.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADAL01

IDs: 220958 [UID] 220938 [GenBank] 220958 [RefSeq]

See Genome Information for Vibrio cholerae

There are 10131 assemblies for this organism

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History (Show revision history)

Comment

DNA Source: Rita Colwell (http://www.cbcb.umd.edu) and Christopher Grim
Vibrio cholerae is the type species of the genus, Vibrio, and it is the most clinically important member of this genus for humans, causing a severe, life-threatening diarrheal disease, cholera. While almost ... all of the over 200 serogroups of V. cholerae can cause disease, cholera epidemics and pandemics are attributed to serogroups O1 and O139 that harbor cholera toxin genes, encoded on a prophage. Serogroup O1 can be further divided into two biotypes, Classical and El Tor, and two serotypes, Inaba and Ogawa. Vibrio cholerae CT 5369-93 was isolated from sewage from Brazil, 1993.
The NIAID funded Bioinformatics Resource Center PathoSystems Resource Integration Center (http://patricbrc.vbi.vt.edu/) is responsible for genome annotation updates of this record.
Genome Coverage: 8x
Sequencing Technology: Sanger; 454  more

Global statistics

Total sequence length3,557,309
Total ungapped length3,557,309
Number of contigs269
Contig N5020,588
Contig L5056
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)269

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,557,3092693,557,30920,58800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio cholerae CT 5369-93Vibrio cholerae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000621645.1Vibrio cholerae ATCC 14035type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000621645.1Vibrio choleraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.0885.8775.95
Best-match type98.0885.8775.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna