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ASM24331v1

Organism name:
Metallosphaera yellowstonensis MK1 (crenarchaeotes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MK1
BioSample:
SAMN02261413
BioProject:
PRJNA64481
Submitter:
JGI
Date:
2012/01/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000243315.1 (latest)
RefSeq assembly accession:
GCF_000243315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AHKJ01
Assembly method:
Newbler v. 2.3
Genome coverage:
30x
Sequencing technology:
454; Illumina

IDs: 356988 [UID] 329908 [GenBank] 356988 [RefSeq]

See Genome Information for Metallosphaera yellowstonensis

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4089280
Source DNA and Organism available from William Inskeep (binskeep@montana.edu)
Contacts: William Inskeep (binskeep@montana.edu)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and ... use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Metallosphaera sp. MK1
collection_date::Missing
lat_lon::44.76 -110.74
depth::Missing
alt_elev::Missing
country::USA
environment::Fresh water, Hot spring
num_replicons::1
ref_biomaterial::Missing
biotic_relationship::Free living
trophic_level::Chemolithoautotroph
rel_to_oxygen::Facultative
isol_growth_condt::Missing
sequencing_meth::WGS
assembly::Newbler v. 2.3 (pre-release)
finishing_strategy::Improved High-Quality Draft
GOLD Stamp ID::Gi04920
Funding Program::DOE-CSP 2008
Gene Calling Method::Prodigal
Isolation Site::Yellowstone National Park, USA
Cell Shape::Coccus-shaped
Temperature Range::Thermophile
Temperature Optimum::65C
pH::2 - 3
Gram Staining::Gram-
Diseases::None
Phenotypes::Acidophile
##MIGS-Data-END##

Global statistics

Total sequence length2,817,452
Total ungapped length2,807,552
Gaps between scaffolds0
Number of scaffolds21
Scaffold N50813,727
Scaffold L502
Number of contigs120
Contig N5069,323
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,817,452212,807,552813,727990

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Metallosphaera yellowstonensis MK1Metallosphaera yellowstonensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022485.1Sulfolobus islandicusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.664.184.11

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena