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IDs: 247968 [UID] 201848 [GenBank] 247968 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087032 Source DNA and organism available from Robert M. Kelly (rmkelly@eos.ncsu.edu) Contacts: Robert M. Kelly (rmkelly@eos.ncsu.edu) Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution ... and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::02/25/2024 07:17:22Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,682CDSs (total)::2,621Genes (coding)::2,585CDSs (with protein)::2,585Genes (RNA)::61rRNAs::3, 3, 3 (5S, 16S, 23S)complete rRNAs::3, 3, 3 (5S, 16S, 23S)tRNAs::48ncRNAs::4Pseudo Genes (total)::36CDSs (without protein)::36Pseudo Genes (ambiguous residues)::0 of 36Pseudo Genes (frameshifted)::18 of 36Pseudo Genes (incomplete)::22 of 36Pseudo Genes (internal stop)::14 of 36Pseudo Genes (multiple problems)::15 of 36CRISPR Arrays::5##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Caldicellulosiruptor hydrothermalis 108collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::Russiaenvironment::Hot springnum_replicons::1ref_biomaterial::DSM 18901biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Anaerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi07642Type Strain::YesIsolation Site::Terrestrial neutral geothermal spring; Russia, KamchatkaCell Shape::Rod-shapedSporulation::NonsporulatingTemperature Range::HyperthermophileTemperature Optimum::79CpH::7.0Gram Staining::Gram-Diseases::None##MIGS-Data-END##
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