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ASM2622v1

Organism name:: Escherichia fergusonii ATCC 35469 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 35469T
BioSample:: SAMEA3138228
BioProject:: PRJNA33369
Submitter:: Genoscope
Date:: 2008/12/18
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000026225.1 (latest)
RefSeq assembly accession:: GCF_000026225.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 45188 [UID] 27028 [GenBank] 45188 [RefSeq]

See Genome Information for Escherichia fergusonii

Pathogen Detection Resources

There are 242 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000026225.1	=	GCF_000026225.1	ASM2622v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MaGe annotation system
http://www.genoscope.cns.fr/agc/mage.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline ... (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 01:27:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,465
CDSs (total)::4,350
Genes (coding)::4,270
CDSs (with protein)::4,270
Genes (RNA)::115
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::86
ncRNAs::7
Pseudo Genes (total)::80
CDSs (without protein)::80
Pseudo Genes (ambiguous residues)::0 of 80
Pseudo Genes (frameshifted)::25 of 80
Pseudo Genes (incomplete)::49 of 80
Pseudo Genes (internal stop)::16 of 80
Pseudo Genes (multiple problems)::10 of 80
Pseudo Genes (short protein)::2 of 80
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,643,861
Total ungapped length	4,643,861
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CU928158.2	=	NC_011740.1
Plasmid pEFER	CU928144.1	=	NC_011743.1

Molecule	Total Length
All	4,643,861
Chromosome	4,588,711
Plasmid pEFER	55,150

	ANI	Query coverage	Subject coverage
Declared type	99.98	99.89	99.88
Best-match type	99.98	99.89	99.88

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ASM2622v1

See Genome Information for Escherichia fergusonii

Pathogen Detection Resources

There are 242 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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