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ASM17441v1

Organism name:
Dethiobacter alkaliphilus AHT 1 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AHT 1
BioSample:
SAMN02441789
BioProject:
PRJNA30985
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2009/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000174415.1 (latest)
RefSeq assembly accession:
GCF_000174415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACJM01

IDs: 216918 [UID] 216898 [GenBank] 216918 [RefSeq]

See Genome Information for Dethiobacter alkaliphilus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4084536
Source DNA and Bacteria available from Gerard Muyzer (g.muyzer@tudelft.nl)
Contacts: Gerard Muyzer (g.muyzer@tudelft.nl)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and ... use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length3,116,746
Total ungapped length3,116,746
Number of contigs34
Contig N50191,499
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,116,746343,116,746191,49900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dethiobacter alkaliphilus AHT 1Dethiobacter alkaliphilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022558445.1Candidatus Contubernalis alkalaceticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.010.490.43

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected