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IDs: 530828 [UID] 529618 [GenBank] 530828 [RefSeq]
Clostridium celatum DSM 1785 is a member of the Firmicutes division of the domain Bacteria and has been isolated from the GI tract. This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human ... Microbiome Project DACC. Source DNA for the sequenced strain (DSM 1785) of Clostridium celatum was obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ; Inhoffenstrasse 7 B, 38124 Braunschweig, Germany). Coding sequences were predicted using GeneMark v3.3 and Glimmer3 v3.02. Intergenic regions not spanned by GeneMark and Glimmer3 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.1. The final gene set is processed through several programs such as Kegg (Release 56), psortB (Version 3.0.3) and Interproscan (Version 4.7) to determine possible function. Gene product names are determined by BER (Version 2.5). Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) is funding the sequence characterization of the Clostridium celatum DSM 1785 genome. more
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