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IDs: 36908 [UID] 16608 [GenBank] 36908 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4002680 Source DNA and archaea available from Todd M. Lowe (lowe@soe.ucsc.edu) Contacts: Todd M. Lowe (lowe@soe.ucsc.edu) Paul Richardson (microbes@cuba.jgi-psf.org) Quality assurance done by JGI-Stanford Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LLNL Finished microbial genomes have been curated ... to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Additional Note: The following regions have unresolved homopolymer regions: 1730980-1730996, 382652-383661, 836734-836747, 1722385-1772398. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::11/27/2023 22:43:30Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::2,323CDSs (total)::2,274Genes (coding)::2,261CDSs (with protein)::2,261Genes (RNA)::49rRNAs::1, 1, 1 (5S, 16S, 23S)complete rRNAs::1, 1, 1 (5S, 16S, 23S)tRNAs::46ncRNAs::0Pseudo Genes (total)::13CDSs (without protein)::13Pseudo Genes (ambiguous residues)::0 of 13Pseudo Genes (frameshifted)::10 of 13Pseudo Genes (incomplete)::5 of 13Pseudo Genes (internal stop)::2 of 13Pseudo Genes (multiple problems)::4 of 13CRISPR Arrays::3##Genome-Annotation-Data-END##
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