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ASM21147v1

Organism name:
Pyrococcus sp. NA2 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: NA2
BioSample:
SAMN02603477
BioProject:
PRJNA65431
Submitter:
Korea Ocean Research and Development Institute
Date:
2011/04/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000211475.1 (latest)
RefSeq assembly accession:
GCF_000211475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 279688 [UID] 276738 [GenBank] 279688 [RefSeq]

See Genome Information for Pyrococcus sp. NA2

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria and DNA are available from the submitters.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/12/2023 00:43:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,058
CDSs (total)::1,988
Genes (coding)::1,968
CDSs (with protein)::1,968
Genes (RNA)::70
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::20
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::0 of 20
Pseudo Genes (frameshifted)::8 of 20
Pseudo Genes (incomplete)::15 of 20
Pseudo Genes (internal stop)::0 of 20
Pseudo Genes (multiple problems)::3 of 20
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,861,320
Total ungapped length1,861,320
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000211485.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002670.1=NC_015474.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,861,320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pyrococcus sp. NA2Pyrococcus sp. NA2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195935.2Pyrococcus abyssitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.8820.2721.33

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna