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ASM214672v1

Organism name:
Bacillus thuringiensis serovar navarrensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BGSC 4BM1
BioSample:
SAMN05934522
BioProject:
PRJNA349211
Submitter:
Huazhong Agricultural University
Date:
2017/05/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002146725.1 (latest)
RefSeq assembly accession:
GCF_002146725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NFDG01
Assembly method:
ABySS v. 1.5.2
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina HiSeq

IDs: 1105291 [UID] 4483818 [GenBank] 4605518 [RefSeq]

See Genome Information for Bacillus thuringiensis

There are 1331 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/08/2017 08:48:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,407
CDS (total)::6,247
Genes (coding)::5,909
CDS (coding)::5,909
Genes (RNA)::160
rRNAs::14, 17, 13 (5S, 16S, 23S)
complete rRNAs::14, 2 (5S, 23S)
partial rRNAs::17, 11 (16S, 23S)
tRNAs::111
ncRNAs::5
Pseudo Genes (total)::338
Pseudo Genes (ambiguous residues)::0 of 338
Pseudo Genes (frameshifted)::174 of 338
Pseudo Genes (incomplete)::133 of 338
Pseudo Genes (internal stop)::129 of 338
Pseudo Genes (multiple problems)::87 of 338
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,187,874
Total ungapped length6,187,874
Number of contigs138
Contig N50154,124
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)138

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,187,8741386,187,874154,12400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensis serovar navarrensisBacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002119445.1Bacillus thuringiensissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022630575.1Bacillus mycoidestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type89.9070.1168.68
Best-match type97.6079.2389.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%