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ASM23720v1

Organism name:: Simkania negevensis Z (bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: Z
BioSample:: SAMEA2272380
BioProject:: PRJEA49035
Submitter:: University of Vienna, Dept. of Microbial Ecology
Date:: 2011/06/21
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000237205.1 (latest)
RefSeq assembly accession:: GCF_000237205.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 441488 [UID] 319938 [GenBank] 441488 [RefSeq]

See Genome Information for Simkania negevensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000237205.1	=	GCF_000237205.1	ASM23720v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Accession number for plasmid pSn in this genome project: FR872581
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 01:29:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,384
CDSs (total)::2,343
Genes (coding)::2,326
CDSs (with protein)::2,326
Genes (RNA)::41
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::35
ncRNAs::3
Pseudo Genes (total)::17
CDSs (without protein)::17
Pseudo Genes (ambiguous residues)::0 of 17
Pseudo Genes (frameshifted)::6 of 17
Pseudo Genes (incomplete)::11 of 17
Pseudo Genes (internal stop)::1 of 17
Pseudo Genes (multiple problems)::1 of 17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,628,375
Total ungapped length	2,628,375
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome gsn.131	FR872582.1	=	NC_015713.1
Plasmid pSn	FR872581.1	=	NC_015710.1

Molecule	Total Length
All	2,628,375
Chromosome gsn.131	2,496,337
Plasmid pSn	132,038

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	87.61	0.19	0.20

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ASM23720v1

See Genome Information for Simkania negevensis

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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