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Source database (GenBank or RefSeq) File type

ASM33130v1

Anomalous assembly.

Organism name:

Calothrix sp. PCC 7103 (cyanobacteria)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: PCC 7103

BioSample:

SAMN02261256

BioProject:

PRJNA159495

Submitter:

JGI

Date:

2013/01/11

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated

GenBank assembly accession:

GCA_000331305.1 (latest)

RefSeq assembly accession:

GCF_000331305.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

ALVJ01

Assembly method:

Newbler v. 2.3

Genome coverage:

30x

Sequencing technology:

454-GS-FLX-Titanium; Illumina HiSeq 2000

IDs: 649658 [UID] 524878 [GenBank] 649658 [RefSeq]

See Genome Information for Calothrix sp. PCC 7103

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000331305.1	=	GCF_000331305.1	ASM33130v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) 
 Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov)
Whole genome sequencing and draft assembly at JGI-PGF. Annotation by JGI-ORNL. The JGI and collaborators endorse the principles for the distribution and use of ... large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

MIGS-Data

##MIGS-Data-START##alt_elev::Missing
assembly::Newbler v. 2.3 (pre-release)
collection_date::Missing
country::USA
depth::Missing
environment::Missing
investigation_type::bacteria_archaea
isol_growth_condt::Missing
lat_lon::43.32 -90.82
project_name::Calothrix sp. PCC 7103
sequencing_meth::WGS
num_replicons::Missing
ref_biomaterial::PCC 7103, ATCC 27905
biotic_relationship::Free living
rel_to_oxygen::Aerobe
finishing_strategy::Finished
trophic_level::Chemoheterotroph
GOLD Stamp ID::Gi09598
Current Finishing Status::Level 2: High-Quality Draft
Type Strain::No
Funding Program::DOE-GEBA 2009
Gene Calling Method::Prodigal 1.4, GenePRIMP
Isolation Site::from herbarium material of Anacystis montana
Source of Isolate::Herbarium specimen of Anacystis montana
Isolation Comments::isolated by MB Allen
Cell Shape::Filament-shaped
Motility::Motile
Temperature Range::Mesophile
Gram Staining::Gram-
Sequencing Depth::30x
Diseases::None
##MIGS-Data-END##

Global statistics

Total sequence length	11,584,393
Total ungapped length	11,578,293
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	8,793,494
Scaffold L50	1
Number of contigs	73
Contig N50	585,731
Contig L50	7
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	73

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	93.63	56.79	57.65

Assembly

Genome Assembly

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ASM33130v1

See Genome Information for Calothrix sp. PCC 7103

Pathogen Detection Resources

History (Show revision history)

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MIGS-Data

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Average Nucleotide Identity (ANI) data

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