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URL -- http://www.jgi.doe.gov
JGI Project ID: 2351356
Source DNA and bacteria available from John J. Dunn (jdunn@bnl.gov)
Contacts: John J. Dunn (jdunn@bnl.gov)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-PGF
Finished microbial genomes have been curated ... to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 12:38:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,398
CDSs (total)::6,319
Genes (coding)::6,220
CDSs (with protein)::6,220
Genes (RNA)::79
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::99
CDSs (without protein)::99
Pseudo Genes (ambiguous residues)::0 of 99
Pseudo Genes (frameshifted)::22 of 99
Pseudo Genes (incomplete)::84 of 99
Pseudo Genes (internal stop)::10 of 99
Pseudo Genes (multiple problems)::16 of 99
##Genome-Annotation-Data-END##

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