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ASM19617v1

Organism name:
Bdellovibrio bacteriovorus HD100 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HD100
BioSample:
SAMEA3138335
BioProject:
PRJNA9637
Submitter:
Max-Planck-Institute
Date:
2004/02/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000196175.1 (latest)
RefSeq assembly accession:
GCF_000196175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 264638 [UID] 256998 [GenBank] 264638 [RefSeq]

See Genome Information for Bdellovibrio bacteriovorus

There are 11 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/07/2024 00:59:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,597
CDSs (total)::3,551
Genes (coding)::3,548
CDSs (with protein)::3,548
Genes (RNA)::46
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::36
ncRNAs::4
Pseudo Genes (total)::3
CDSs (without protein)::3
Pseudo Genes (ambiguous residues)::0 of 3
Pseudo Genes (frameshifted)::0 of 3
Pseudo Genes (incomplete)::2 of 3
Pseudo Genes (internal stop)::1 of 3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,782,950
Total ungapped length3,782,950
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000196185.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BX842601.2=NC_005363.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 3,782,95013,782,9503,782,95000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bdellovibrio bacteriovorus HD100Bdellovibrio bacteriovorus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000348725.1Pseudobdellovibrio exovorustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.280.280.40

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected