##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/23/2023 01:42:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,367
CDSs (total)::4,301
Genes (coding)::4,241
CDSs (with protein)::4,241
Genes (RNA)::66
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::52
ncRNAs::5
Pseudo Genes (total)::60
CDSs (without protein)::60
Pseudo Genes (ambiguous residues)::0 of 60
Pseudo Genes (frameshifted)::43 of 60
Pseudo Genes (incomplete)::21 of 60
Pseudo Genes (internal stop)::2 of 60
Pseudo Genes (multiple problems)::6 of 60
##Genome-Annotation-Data-END##

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Marinobacter adhaerens HP15 genome project
collection_date::2000-08-10
lat_lon::53.43.20 N 7.43.20 E
depth::1 m
alt_elev::0 m
country::Germany
environment::marine water
num_replicons::3
ref_biomaterial::PMID: 19712327; DOI: 10.1016/S0168-6496(03)00305-2
biotic_relationship::free-living and particle-associated
trophic_level::heterotroph
rel_to_oxygen::aerobic
isol_growth_condt::-> PMID: 19712327; DOI: 10.1016/S0168-6496(03)00305-2; Marinobacter adhaerens HP15 grows optimally at a range of 34-38 degrees Celsius, a pH of 7.0-8.5 and is able to withstand salt concentrations between 0.4-20% (w/v) NaCl; culture media: Marine Broth
sequencing_meth::pyrosequencing
assembly::assembler: Newbler (Parameters: Seed step:12; Seed length: 16; minimum overlap length: 40; minimum overlap identity: 90; Alignment identity score: 2; Alignment difference score: -3); error rate: 0.3%; error rate estimation: from Newbler base calling
finishing_strategy::status: finished; error rate: 3/1,000 (0.3%); contigs: 3
temp::15 deg C
habitat::temperate shelf and sea biome (ENVO:00000895), tidal mudflat (ENVO:00000241), coastal water (ENVO:00002150)
collected_by::Hans Peter Grossart
sample-material::water
##MIGS-Data-END##