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ASM76783v1

Organism name:
Streptococcus sinensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: HKU4
BioSample:
SAMN02848449
BioProject:
PRJNA251999
Submitter:
The University of Hong Kong
Date:
2014/10/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000767835.1 (latest)
RefSeq assembly accession:
GCF_000767835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JPEN01
Assembly method:
SOAPec v. 2
Expected final version:
no
Genome coverage:
10.0x
Sequencing technology:
Illumina HiSeq

IDs: 217551 [UID] 1363448 [GenBank] 1447388 [RefSeq]

See Genome Information for Streptococcus sinensis

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,061,843
Total ungapped length2,061,843
Number of contigs116
Contig N5038,906
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,061,8431162,061,84338,90600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sinensisStreptococcus sinensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000187855.1Streptococcus cristatustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.5959.5162.50

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected