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ASM76009v1

Organism name:
Prochlorococcus marinus str. MIT 9401 (cyanobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MIT 9401
BioSample:
SAMN02769561
BioProject:
PRJNA246696
Submitter:
MIT
Date:
2014/09/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000760095.1 (latest)
RefSeq assembly accession:
GCF_000760095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNAR01
Assembly method:
Newbler v. 2.6
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina GAIIx

IDs: 213821 [UID] 1316538 [GenBank] 1351748 [RefSeq]

See Genome Information for Prochlorococcus marinus

There are 109 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,666,808
Total ungapped length1,666,808
Number of contigs17
Contig N50110,519
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)17

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,666,808171,666,808110,51900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prochlorococcus marinus str. MIT 9401Prochlorococcus marinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000011465.1Prochlorococcus marinus subsp. pastoris str. CCMP1986type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011465.1Prochlorococcus marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type79.7459.8060.11
Best-match type79.7459.8060.11

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna