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ASM80080v1

Organism name:
Candidatus Methanoplasma termitum (archaea)
Taxonomy check:
OK
Infraspecific name:
Strain: MpT1
BioSample:
SAMN03224143
BioProject:
PRJNA268719
Submitter:
Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory
Date:
2014/12/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000800805.1 (latest)
RefSeq assembly accession:
GCF_000800805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.8
Genome coverage:
37x
Sequencing technology:
Sanger dideoxy sequencing; 454

IDs: 233941 [UID] 1420278 [GenBank] 1837518 [RefSeq]

See Genome Information for Candidatus Methanoplasma termitum

History (Show revision history)

Comment

Source DNA available from Max Planck Institute for Terrestrial Microbiology, Department of Biogeochemistry, Karl-von-Frisch-Str. 10, 35043 Marburg, Germany
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000800805.1-RS_2024_03_31
Annotation Date::03/31/2024 08:25:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,456
CDSs (total)::1,405
Genes (coding)::1,401
CDSs (with protein)::1,401
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::4
CDSs (without protein)::4
Pseudo Genes (ambiguous residues)::0 of 4
Pseudo Genes (frameshifted)::0 of 4
Pseudo Genes (incomplete)::0 of 4
Pseudo Genes (internal stop)::4 of 4
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,488,669
Total ungapped length1,488,669
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000800815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010070.1=NZ_CP010070.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,488,669

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Methanoplasma termitumCandidatus Methanoplasma termitum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003711245.1Methanomethylophilus alvitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.380.750.67

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected