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ASM95411v1

Organism name:
Rhodococcus sp. B7740 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: B7740
BioSample:
SAMN03140693
BioProject:
PRJNA264767
Submitter:
Zhejiang Wanli University
Date:
2015/03/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000954115.1 (latest)
RefSeq assembly accession:
GCF_000954115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
smrtanalysis v. 2.2.0
Genome coverage:
134.03x
Sequencing technology:
PacBio RSII

IDs: 312301 [UID] 1687168 [GenBank] 1697418 [RefSeq]

See Genome Information for Rhodococcus sp. B7740

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria available from Jigang Chen, Zhejiang Wanli University (genomic@163.com)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 02:19:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,035
CDSs (total)::4,972
Genes (coding)::4,925
CDSs (with protein)::4,925
Genes (RNA)::63
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::48
ncRNAs::3
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::26 of 47
Pseudo Genes (incomplete)::22 of 47
Pseudo Genes (internal stop)::5 of 47
Pseudo Genes (multiple problems)::4 of 47
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,341,557
Total ungapped length5,341,557
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000954125.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP010797.1=NZ_CP010797.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,341,557

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhodococcus sp. B7740Rhodococcus sp. B7740

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001894785.1Rhodococcus fascianstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.9670.7665.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna