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GFC_23

Organism name:
Burkholderia sp. MSHR3999 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MSHR3999
BioSample:
SAMN03019860
BioProject:
PRJNA260165
Submitter:
Los Alamos National Laboratory
Date:
2015/02/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000833595.1 (latest)
RefSeq assembly accession:
GCF_000833595.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRFO01
Assembly method:
Celera Assembler v. 8
Expected final version:
yes
Genome coverage:
249.0x
Sequencing technology:
Illumina; 454; PacBio

IDs: 250851 [UID] 1525928 [GenBank] 1528708 [RefSeq]

See Genome Information for Burkholderia sp. MSHR3999

History (Show revision history)

Comment

Global statistics

Total sequence length7,894,237
Total ungapped length7,894,237
Number of contigs7
Contig N502,338,592
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)7

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,894,23777,894,2372,338,59200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia sp. MSHR3999Burkholderia sp. MSHR3999

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902833085.1Burkholderia ubonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.6780.0981.41

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna