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JCVI-bewag-v1.1

Organism name:: Theileria equi strain WA (apicomplexans)
Infraspecific name:: Strain: WA
BioSample:: SAMN02953758
BioProject:: PRJNA38023
Submitter:: J. Craig Venter Institute
Date:: 2012/12/11
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000342415.1 (latest)
RefSeq assembly accession:: GCF_000342415.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: ACOU01
Assembly method:: Celera Assembler v. 2009; plus gap-closing
Genome coverage:: 7x
Sequencing technology:: Sanger

IDs: 552368 [UID] 552368 [GenBank] 1011908 [RefSeq]

See Genome Information for Theileria equi

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000342415.1	=	GCF_000342415.1	JCVI-bewag-v1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

Chromosomes 1 and 3 are complete. Chromosome 2 is in two ordered pieces. Chromosome 4 is in six unordered pieces.
chr1: CP001669
chr2: ACOU01000001 and ACOU01000002
chr3: CP001670
chr4: ACOU01000003-ACOU01000008
apicoplast: ACOU01000009
mitochondrion: ACOU01000010

Global statistics

Total sequence length	11,674,479
Total ungapped length	11,674,479
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	2,338,319
Scaffold L50	2
Number of contigs	12
Contig N50	2,338,319
Contig L50	2
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	12

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CP001669.1	=	NC_021366.1	0
Chromosome 2	n/a	n/a	n/a	2
Chromosome 3	CP001670.1	=	NC_021367.1	0
Chromosome 4	n/a	n/a	n/a	6

Molecule name	GenBank ID		RefSeq ID	Unlocalized sequences count
Mitochondrion MT	n/a	n/a	n/a	1
Apicoplast Pltd	n/a	n/a	n/a	1

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	11,617,598	10	11,617,598	2,338,319	0	0
Chromosome 1	Assembled molecule	3,677,484	1	3,677,484	3,677,484	0	0
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	2,120,80802,120,808	202	2,120,80802,120,808	2,060,34902,060,349	000	000
Chromosome 3	Assembled molecule	2,338,319	1	2,338,319	2,338,319	0	0
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	3,480,98703,480,987	606	3,480,98703,480,987	1,020,68701,020,687	000	000

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	56,881	2	56,881	47,880	0	0
Mitochondrion MT	AllAssembled moleculeUnlocalized scaffolds	9,00109,001	101	9,00109,001	9,00109,001	000	000
Apicoplast Pltd	AllAssembled moleculeUnlocalized scaffolds	47,880047,880	101	47,880047,880	47,880047,880	000	000

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JCVI-bewag-v1.1

See Genome Information for Theileria equi

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear