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ASM73671v1

Organism name:
Cellulosimicrobium sp. MM (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MM
BioSample:
SAMN02941831
BioProject:
PRJNA255748
Submitter:
University of Delhi
Date:
2014/07/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000736715.1 (latest)
RefSeq assembly accession:
GCF_000736715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JPQW01
Assembly method:
Velvet v. 1.2.10; Minimus2 v. 2.0
Expected final version:
yes
Genome coverage:
1000.0x
Sequencing technology:
Illumina HiSeq

IDs: 201761 [UID] 1182218 [GenBank] 1431738 [RefSeq]

See Genome Information for Cellulosimicrobium sp. MM

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/30/2014 10:33:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.6 (rev. 440435)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,961
CDS::2,087
Pseudo Genes::820
rRNAs::4 ( 5S, 16S, 23S )
tRNAs::49
ncRNA::1
Frameshifted Genes::816
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,846,862
Total ungapped length3,846,862
Number of contigs299
Contig N5019,682
Contig L5054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)299

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,846,8622993,846,86219,68200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Cellulosimicrobium sp. MMCellulosimicrobium sp. MM

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001570825.1Cellulosimicrobium funkeisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.2383.6073.59

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna