U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM2865790v1

Organism name:
Burkholderia sp. FERM BP-3421 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FERM BP-3421
BioSample:
SAMN31673526
BioProject:
PRJNA899914
Submitter:
University of Illinois at Chicago
Date:
2023/02/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_028657905.1 (latest)
RefSeq assembly accession:
GCF_028657905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.9
Expected final version:
yes
Genome coverage:
38.0x
Sequencing technology:
Illumina; Oxford Nanopore

IDs: 15904791 [UID] 40825708 [GenBank] 40908498 [RefSeq]

See Genome Information for Burkholderia sp. FERM BP-3421

Pathogen Detection Resources

History (Show revision history)

Comment

Bacteria and source DNA available from Alessandra S. Eustaquio, Department of Pharmaceutical Sciences, College of Pharmacy, University of Illinois at Chicago, Chicago, IL 60607, USA
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP ... can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_028657905.1-RS_2024_03_26
Annotation Date::03/26/2024 01:57:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,795
CDSs (total)::6,716
Genes (coding)::6,403
CDSs (with protein)::6,403
Genes (RNA)::79
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::313
CDSs (without protein)::313
Pseudo Genes (ambiguous residues)::0 of 313
Pseudo Genes (frameshifted)::153 of 313
Pseudo Genes (incomplete)::190 of 313
Pseudo Genes (internal stop)::45 of 313
Pseudo Genes (multiple problems)::67 of 313
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,732,058
Total ungapped length7,732,058
Total number of chromosomes and plasmids4

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_028657915.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP117782.1=NZ_CP117782.1
Chromosome 2CP117781.1=NZ_CP117781.1
Plasmid p1CP117780.1=NZ_CP117780.1
Plasmid p2CP117779.1=NZ_CP117779.1

Assembly statistics

MoleculeTotal
Length
All7,732,058
Chromosome 13,899,588
Chromosome 23,002,736
Plasmid p1591,164
Plasmid p2238,570

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia sp. FERM BP-3421Burkholderia sp. FERM BP-3421

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000170495.1Burkholderia humptydooensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.2738.4042.68

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna