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De novo assembly of single-cell genomes

Organism name:
Prochlorococcus sp. scB243_495P20 (cyanobacteria)
Taxonomy check:
OK
Isolate:
scB243_495P20
BioSample:
SAMN02671348
BioProject:
PRJNA239872
Submitter:
Massachusetts Institute of Technology
Date:
2014/04/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
GenBank assembly accession:
GCA_000634875.1 (latest)
RefSeq assembly accession:
GCF_000634875.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JFMB01
Assembly method:
CLC NGS Cell v. 3.2
Expected final version:
yes
Single-cell amplification:
Yes
Genome coverage:
100.0x
Sequencing technology:
Illumina GAIIx

IDs: 149931 [UID] 1010408 [GenBank] 1102848 [RefSeq]

See Genome Information for Prochlorococcus sp. scB243_495P20

History (Show revision history)

Comment

Global statistics

Total sequence length986,037
Total ungapped length986,037
Number of contigs270
Contig N5052,759
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)270

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced986,037270986,03752,75900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prochlorococcus sp. scB243_495P20Prochlorococcus sp. scB243_495P20

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011465.1Prochlorococcus marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.6655.7533.15

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna