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ASM72236v1

Organism name:
Streptomyces sp. NRRL F-4835 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NRRL F-4835
BioSample:
SAMN02645499
BioProject:
PRJNA238534
Submitter:
University of Illinois
Date:
2014/07/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • fragmented assembly
  • low quality sequence
GenBank assembly accession:
GCA_000722365.1 (latest)
RefSeq assembly accession:
GCF_000722365.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JOIE01
Assembly method:
IDBA UD v. 1.0.9
Genome coverage:
146x
Sequencing technology:
Illumina

IDs: 194301 [UID] 1161678 [GenBank] 1168378 [RefSeq]

See Genome Information for Streptomyces sp. NRRL F-4835

History (Show revision history)

Comment

Bacteria available from NRRL

Global statistics

Total sequence length8,385,561
Total ungapped length8,040,171
Gaps between scaffolds0
Number of scaffolds174
Scaffold N50135,412
Scaffold L5017
Number of contigs2,156
Contig N507,100
Contig L50338
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2,156

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,385,5611748,040,171135,4121,9820

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. NRRL F-4835Streptomyces sp. NRRL F-4835

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650135.1Streptomyces plicatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0092.7289.08

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna