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NGEN (DNA Star)

Organism name:
Enterococcus crotali (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ETRF1
BioSample:
SAMN02729938
BioProject:
PRJNA226735
Submitter:
Gateway Technical College
Date:
2014/04/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000633635.1 (latest)
RefSeq assembly accession:
GCF_000633635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYPQ01
Assembly method:
NGEN v. 11
Expected final version:
no
Genome coverage:
80.0x
Sequencing technology:
IonTorrent

IDs: 149301 [UID] 1008948 [GenBank] 1101368 [RefSeq]

See Genome Information for Enterococcus crotali

History (Show revision history)

Comment

Bacteria available from Richard McLaughlin Gateway Technical College 3520 - 30th Avenue, Kenosha, WI 53144. Source DNA available from Richard McLaughlin Gateway Technical College 3520 - 30th Avenue, Kenosha, WI 53144.

Global statistics

Total sequence length3,902,091
Total ungapped length3,902,091
Number of contigs20
Contig N50408,622
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)20

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,902,091203,902,091408,62200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterococcus crotaliEnterococcus crotali

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001465115.1Enterococcus silesiacustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.2273.4272.94

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected