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ASM95944v1

Organism name:
Burkholderia vietnamiensis LMG 10929 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LMG 10929
BioSample:
SAMN03107475
BioProject:
PRJNA235223
Submitter:
Los Alamos National Laboratory
Date:
2015/03/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000959445.1 (latest)
RefSeq assembly accession:
GCF_000959445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24; HGAP v. 2.2.0
Genome coverage:
501x
Sequencing technology:
Illumina; PacBio

IDs: 315081 [UID] 1699558 [GenBank] 1704668 [RefSeq]

See Genome Information for Burkholderia vietnamiensis

Pathogen Detection Resources

There are 213 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000959445.1-RS_2024_03_30
Annotation Date::03/30/2024 01:51:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,285
CDSs (total)::6,192
Genes (coding)::6,054
CDSs (with protein)::6,054
Genes (RNA)::93
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::71
ncRNAs::4
Pseudo Genes (total)::138
CDSs (without protein)::138
Pseudo Genes (ambiguous residues)::0 of 138
Pseudo Genes (frameshifted)::39 of 138
Pseudo Genes (incomplete)::117 of 138
Pseudo Genes (internal stop)::15 of 138
Pseudo Genes (multiple problems)::31 of 138
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,930,496
Total ungapped length6,930,496
Total number of chromosomes and plasmids4

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000959455.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ICP009631.1=NZ_CP009631.1
Chromosome IICP009630.1=NZ_CP009630.1
Chromosome IIICP009632.1=NZ_CP009632.1
Plasmid pBVB_1CP009629.1=NZ_CP009629.1

Assembly statistics

MoleculeTotal
Length
All6,930,496
Chromosome I3,317,416
Chromosome II2,262,093
Chromosome III1,248,367
Plasmid pBVB_1102,620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia vietnamiensis LMG 10929Burkholderia vietnamiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020099355.1Burkholderia vietnamiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna