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EcF6627

Organism name:
Escherichia coli O111:H8 str. F6627 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: F6627
BioSample:
SAMN02353073
BioProject:
PRJNA218110
Submitter:
CDC
Date:
2014/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
GenBank assembly accession:
GCA_000618125.1 (latest)
RefSeq assembly accession:
GCF_000618125.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHJS01
Assembly method:
wgs assembler v. 7.0.Dec-2012
Genome coverage:
93.5.0x
Sequencing technology:
Illumina HiSeq 2000; PacBio

IDs: 140081 [UID] 990448 [GenBank] 1340358 [RefSeq]

See Genome Information for Escherichia coli

There are 266864 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/05/2014 13:13:52
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.4 (rev. 431131)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,053
CDS::4,838
Pseudo Genes::91
CRISPR Arrays::2
rRNAs::14 ( 5S, 16S, 23S )
tRNAs::89
ncRNA::21
Frameshifted Genes::67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,137,238
Total ungapped length5,137,238
Number of contigs95
Contig N50131,130
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,137,238955,137,238131,13000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli O111:H8 str. F6627Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000263895.1Escherichia coli O103:H25 str. CVM9340claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000263895.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0389.5387.43
Best-match type99.0389.5387.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna