U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM69597v1

Organism name:
Leptospirillum ferriphilum YSK (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YSK
BioSample:
SAMN03081536
BioProject:
PRJNA232614
Submitter:
Central South University
Date:
2014/05/27
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000695975.1 (latest)
RefSeq assembly accession:
GCF_000695975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2.0
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq; IonTorrent

IDs: 180681 [UID] 1085928 [GenBank] 1497418 [RefSeq]

See Genome Information for Leptospirillum ferriphilum

There are 38 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA/bacteria from Central South University

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000695975.1-RS_2024_03_28
Annotation Date::03/28/2024 13:55:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,284
CDSs (total)::2,225
Genes (coding)::2,207
CDSs (with protein)::2,207
Genes (RNA)::59
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::7 of 18
Pseudo Genes (incomplete)::14 of 18
Pseudo Genes (internal stop)::8 of 18
Pseudo Genes (multiple problems)::7 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,330,585
Total ungapped length2,330,585
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000695985.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007243.1=NZ_CP007243.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,330,585

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leptospirillum ferriphilum YSKLeptospirillum ferriphilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000755505.1Leptospirillum ferriphilumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000755505.1Leptospirillum ferriphilumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type91.6185.7383.05
Best-match type91.6185.7383.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna