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BPE

Organism name:
Burkholderia pseudomallei MSHR449 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MSHR449
BioSample:
SAMN02999500
BioProject:
PRJNA231481
Submitter:
Los Alamos National Laboratory
Date:
2014/11/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000774895.1 (latest)
RefSeq assembly accession:
GCF_000774895.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JQFO01
Assembly method:
Newbler v. 2.6; Velvet v. 1.1.05; phredPhrap v. SPS - 4.24
Expected final version:
yes
Genome coverage:
1186.0x
Sequencing technology:
454; Illumina

IDs: 221041 [UID] 1374088 [GenBank] 1456138 [RefSeq]

See Genome Information for Burkholderia pseudomallei

There are 3251 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length7,311,296
Total ungapped length7,303,396
Gaps between scaffolds0
Number of scaffolds4
Scaffold N504,072,602
Scaffold L501
Number of contigs83
Contig N50174,689
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)83

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,311,29647,303,3964,072,602790

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia pseudomallei MSHR449Burkholderia pseudomallei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2093.5096.44
Best-match type99.2093.5096.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna