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MT49-02

Organism name:
Mycobacterium tuberculosis 49-02 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 49-02
BioSample:
SAMEA3865285
BioProject:
PRJEB4916
Submitter:
JLU
Date:
2014/11/03
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000786505.1 (latest)
RefSeq assembly accession:
GCF_000786505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Genome coverage:
47x

IDs: 226831 [UID] 1387918 [GenBank] 1492618 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

There are 7614 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/22/2023 04:17:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,134
CDSs (total)::4,083
Genes (coding)::3,906
CDSs (with protein)::3,906
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::3
Pseudo Genes (total)::177
CDSs (without protein)::177
Pseudo Genes (ambiguous residues)::0 of 177
Pseudo Genes (frameshifted)::95 of 177
Pseudo Genes (incomplete)::97 of 177
Pseudo Genes (internal stop)::19 of 177
Pseudo Genes (multiple problems)::29 of 177
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,412,379
Total ungapped length4,412,379
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000786515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome IHG813240.1=NZ_HG813240.1

Assembly statistics

MoleculeTotal
Length
Chromosome I4,412,379

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosis 49-02Mycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000277735.2Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000277735.2Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9199.0899.09
Best-match type99.9199.0899.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna