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Spspn.str22725_v1.0

Organism name:
Streptococcus pseudopneumoniae 22725 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 22725
BioSample:
SAMN02470838
BioProject:
PRJNA225867
Submitter:
Research Institute of Physical-Chemical Medicine, Moscow, Russia
Date:
2013/12/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000506685.1 (latest)
RefSeq assembly accession:
GCF_000506685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYRO01
Assembly method:
GS De Novo Assembler v. 2.8
Expected final version:
no
Genome coverage:
18.0x
Sequencing technology:
454

IDs: 85811 [UID] 874448 [GenBank] 876878 [RefSeq]

See Genome Information for Streptococcus pseudopneumoniae

There are 122 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source DNA available from Research Institute of Physical-Chemical Medicine.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/12/2013 15:50:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.2 (rev. 417454)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,360
CDS::2,157
Pseudo Genes::155
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::44
ncRNA::1
Frameshifted Genes::100
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,230,983
Total ungapped length2,230,983
Number of contigs117
Contig N5051,211
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)117

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,230,9831172,230,98351,21100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus pseudopneumoniae 22725Streptococcus pseudopneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002087075.1Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002087075.1Streptococcus pseudopneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2390.7393.26
Best-match type97.2390.7393.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna