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Stap_aure_1111100370_V1

Organism name:
Staphylococcus aureus 1111100370 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 1111100370
BioSample:
SAMN02391258
BioProject:
PRJNA226384
Submitter:
Broad Institute
Date:
2014/04/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000636615.1 (latest)
RefSeq assembly accession:
GCF_000636615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JJDT01
Assembly method:
allpaths v. R48559
Genome coverage:
88.0x
Sequencing technology:
Illumina

IDs: 150811 [UID] 1012618 [GenBank] 1271858 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90982 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length2,723,869
Total ungapped length2,722,901
Gaps between scaffolds0
Number of scaffolds56
Scaffold N5094,942
Scaffold L509
Number of contigs60
Contig N5074,103
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)60

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,723,869562,722,90194,94240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus 1111100370Staphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000330825.2Staphylococcus aureus subsp. aureus DSM 20231type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000330825.2Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0794.4793.32
Best-match type99.0794.4793.32

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna