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ASM70226v1

Organism name:
Butyrivibrio sp. NC2002 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NC2002
BioSample:
SAMN02841201
BioProject:
PRJNA223497
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000702265.1 (latest)
RefSeq assembly accession:
GCF_000702265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNKZ01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 184301 [UID] 1109278 [GenBank] 1438438 [RefSeq]

See Genome Information for Butyrivibrio sp. NC2002

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1025987
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
investigation_type::bacteria_archaea
project_name::Butyrivibrio sp. NC2002
sequencing_meth::WGS
GOLD Stamp ID::Gi0054448
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length3,407,272
Total ungapped length3,406,314
Gaps between scaffolds0
Number of scaffolds8
Scaffold N50689,060
Scaffold L503
Number of contigs13
Contig N50567,328
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)12

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,407,27283,406,314689,06050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyrivibrio sp. NC2002Butyrivibrio sp. NC2002

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900112085.1Acetitomaculum ruministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.740.961.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena