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Source database (GenBank or RefSeq) File type

ASM48588v1

Organism name:: Staphylococcus aureus subsp. aureus Z172 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: Z172
BioSample:: SAMN02370325
BioProject:: PRJNA222409
Submitter:: National Health Research Institutes
Date:: 2013/10/29
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000485885.1 (latest)
RefSeq assembly accession:: GCF_000485885.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Celera Assembler v. 7.0
Reference guided assembly:: NC_017331.1
Genome coverage:: 899x; 77x
Sequencing technology:: Illumina; PacBio

IDs: 73501 [UID] 834128 [GenBank] 845928 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90970 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000485885.1	=	GCF_000485885.1	ASM48588v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Tsai-Ling Lauderdale (Lauderdale@nhri.org.tw), National Institute of Infectious Diseases and Vaccinology, National Health Research Institutes, Taiwan.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::12/07/2023 08:13:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,067
CDSs (total)::2,987
Genes (coding)::2,883
CDSs (with protein)::2,883
Genes (RNA)::80
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::104
CDSs (without protein)::104
Pseudo Genes (ambiguous residues)::0 of 104
Pseudo Genes (frameshifted)::59 of 104
Pseudo Genes (incomplete)::40 of 104
Pseudo Genes (internal stop)::21 of 104
Pseudo Genes (multiple problems)::15 of 104
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,018,303
Total ungapped length	3,018,303
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP006838.1	=	NC_022604.1
Plasmid pZ172_1	CP006839.1	=	NC_022610.1
Plasmid pZ172_2	CP006840.1	=	NC_022605.1

Molecule	Total Length
All	3,018,303
Chromosome	2,987,966
Plasmid pZ172_1	27,326
Plasmid pZ172_2	3,011

	ANI	Query coverage	Subject coverage
Declared type	99.46	88.15	95.47
Best-match type	99.46	88.15	95.47

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ASM48588v1

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90970 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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