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Q460

Organism name:
Escherichia coli ATCC BAA-2219 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC BAA-2219
BioSample:
SAMN02469309
BioProject:
PRJNA221248
Submitter:
American Type Culture Collection
Date:
2013/12/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000508385.1 (latest)
RefSeq assembly accession:
GCF_000508385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYRW01
Assembly method:
CLC NGS Cell v. 06-Nov-2013
Expected final version:
yes
Genome coverage:
66.66x
Sequencing technology:
Illumina MiSeq

IDs: 86891 [UID] 878848 [GenBank] 1059198 [RefSeq]

See Genome Information for Escherichia coli

There are 266722 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from BAA-2219. Source DNA available from BAA-2219D-5.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/12/2013 14:20:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.3 (rev. 418893)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,285
CDS::5,138
Pseudo Genes::39
CRISPR Arrays::2
rRNAs::6 ( 5S, 16S, 23S )
tRNAs::84
ncRNA::18
Frameshifted Genes::23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,161,016
Total ungapped length5,161,016
Number of contigs495
Contig N5059,949
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)495

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,161,0164955,161,01659,94900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli ATCC BAA-2219Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000263895.1Escherichia coli O103:H25 str. CVM9340claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000263895.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9192.7090.94
Best-match type98.9192.7090.94

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna