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04_NF40_HMP654v01

Organism name:
Prevotella disiens DNF00882 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DNF00882
BioSample:
SAMN02850974
BioProject:
PRJNA219674
Submitter:
J. Craig Venter Institute
Date:
2014/09/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000759225.1 (latest)
RefSeq assembly accession:
GCF_000759225.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRNR01
Assembly method:
Newbler v. 2.9
Genome coverage:
60.76x
Sequencing technology:
Illumina

IDs: 213311 [UID] 1305338 [GenBank] 1443858 [RefSeq]

See Genome Information for Prevotella disiens

There are 15 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::07/09/2014 17:03:49
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.6 (rev. 439576)
Genes::2,418
CDS::2,350
Pseudo Genes::21
CRISPR Arrays::3
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::43
ncRNA::1
Frameshifted Genes::11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,832,207
Total ungapped length2,832,207
Number of contigs298
Contig N5025,872
Contig L5030
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)298

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,832,2072982,832,20725,87200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella disiens DNF00882Prevotella disiens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000467875.1Prevotella disiens JCM 6334 = ATCC 29426type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000467875.1Prevotella disienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5279.2783.62
Best-match type98.5279.2783.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna