U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Stap_aure_M0985_V1

Organism name:
Staphylococcus aureus M0985 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: M0985
BioSample:
SAMN02334622
BioProject:
PRJNA217098
Submitter:
Broad Institute
Date:
2014/02/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000546125.1 (latest)
RefSeq assembly accession:
GCF_000546125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JCTK01
Assembly method:
allpaths v. R47687
Genome coverage:
90.0x
Sequencing technology:
Illumina

IDs: 105581 [UID] 919658 [GenBank] 1327618 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 91009 assemblies for this organism

See more

History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length2,861,642
Total ungapped length2,861,154
Gaps between scaffolds0
Number of scaffolds50
Scaffold N50227,813
Scaffold L505
Number of contigs52
Contig N50227,813
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)52

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,861,642502,861,154227,81320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus M0985Staphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000330825.2Staphylococcus aureus subsp. aureus DSM 20231type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000330825.2Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9692.3095.81
Best-match type98.9692.3095.81

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna