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Lactobacillus equi DPC 6820

Organism name:
Ligilactobacillus equi DPC 6820 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DPC 6820
BioSample:
SAMN02404457
BioProject:
PRJNA216979
Submitter:
Teagasc Food Research Centre
Date:
2013/12/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000504525.1 (latest)
RefSeq assembly accession:
GCF_000504525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AWWH01
Assembly method:
Velvet v. 1.2.07
Expected final version:
yes
Genome coverage:
1608.0x
Sequencing technology:
Illumina HiSeq

IDs: 84691 [UID] 871658 [GenBank] 974288 [RefSeq]

See Genome Information for Ligilactobacillus equi

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from DPC culture collection, Teagasc Food Research Centre, Moorepark, Ireland. Source DNA available from DPC culture collection, Teagasc Food Research Centre, Moorepark, Ireland.

Global statistics

Total sequence length2,175,589
Total ungapped length2,175,589
Number of contigs203
Contig N5030,213
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)203

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,175,5892032,175,58930,21300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ligilactobacillus equi DPC 6820Ligilactobacillus equi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001435735.1Ligilactobacillus equi DSM 15833 = JCM 10991type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001435735.1Ligilactobacillus equitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9388.4184.24
Best-match type98.9388.4184.24

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna