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ASM56905v1

Organism name:
Bifidobacterium breve 689b (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 689b
BioSample:
SAMN03081482
BioProject:
PRJNA214955
Submitter:
University of Parma
Date:
2014/02/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000569055.1 (latest)
RefSeq assembly accession:
GCF_000569055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. Oct 2012
Genome coverage:
30x
Sequencing technology:
Roche 454 titanium

IDs: 117331 [UID] 943148 [GenBank] 1492818 [RefSeq]

See Genome Information for Bifidobacterium breve

There are 604 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from GenProbio Ltd, Parma, Italy.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/01/2024 00:53:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,013
CDSs (total)::1,951
Genes (coding)::1,888
CDSs (with protein)::1,888
Genes (RNA)::62
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::63
CDSs (without protein)::63
Pseudo Genes (ambiguous residues)::0 of 63
Pseudo Genes (frameshifted)::21 of 63
Pseudo Genes (incomplete)::46 of 63
Pseudo Genes (internal stop)::7 of 63
Pseudo Genes (multiple problems)::11 of 63
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,331,707
Total ungapped length2,331,707
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000569065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006715.1=NZ_CP006715.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,331,707

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium breve 689bBifidobacterium breve

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001025175.1Bifidobacterium breve DSM 20213 = JCM 1192type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001025175.1Bifidobacterium brevetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9088.4090.83
Best-match type98.9088.4090.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna